All functions

aggregate_cells()

Aggregate cells

arrange

Order rows using column values

as_tibble(<SpatialExperiment>)

Coerce lists, matrices, and more to data frames

bind_cols(<SpatialExperiment>)

Efficiently bind multiple data frames by row and column

bind_rows(<SpatialExperiment>)

Efficiently bind multiple data frames by row and column

add_count(<SpatialExperiment>)

Count the observations in each group

distinct

Keep distinct/unique rows

ellipse()

Ellipse Gating Function

extract(<SpatialExperiment>)

Extract a character column into multiple columns using regular expression groups

filter(<SpatialExperiment>)

Keep rows that match a condition

print(<SpatialExperiment>)

Printing tibbles

ggplot

Create a new ggplot from a tidySpatialExperiment

glimpse

Get a glimpse of your data

group_by

Group by one or more variables

inner_join(<SpatialExperiment>)

Mutating joins

join_features

Extract and join information for features.

left_join(<SpatialExperiment>)

Mutating joins

mutate(<SpatialExperiment>)

Create, modify, and delete columns

nest(<SpatialExperiment>)

Nest rows into a list-column of data frames

pivot_longer

Pivot data from wide to long

plot_ly(<SpatialExperiment>)

Initiate a plotly visualization

pull

Extract a single column

rectangle()

Rectangle Gating Function

rename

Rename columns

right_join(<SpatialExperiment>)

Mutating joins

rowwise

Group input by rows

sample_n(<SpatialExperiment>) sample_frac(<SpatialExperiment>)

Sample n rows from a table

select(<SpatialExperiment>)

Keep or drop columns using their names and types

separate(<SpatialExperiment>)

Separate a character column into multiple columns with a regular expression or numeric locations

slice slice_head slice_tail slice_sample slice_min slice_max

Subset rows using their positions

summarise summarize

Summarise each group down to one row

tbl_format_header(<tidySpatialExperiment>)

Format the header of a tibble

unite(<SpatialExperiment>)

Unite multiple columns into one by pasting strings together

unnest(<tidySpatialExperiment_nested>) unnest_single_cell_experiment()

Unnest a list-column of data frames into rows and columns